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Course Outline
Introduction to the Python programming language
- Why choose Python?
- Utilizing Python for biological data processing
- Working with the iPython shell
- Your first program
- Writing Python scripts
- Importing modules
Working with protein and RNA/DNA sequences
- Identifying motifs
- In silico transcription and translation
- Handling sequence alignments
Parsing data in various biological formats
- Parsing FASTA files
- Converting data formats
Conducting biological analyses
- BLAST
- Accessing biological web services
Managing biological 3D structures with Python
Python for statistical analysis
Data visualization
- Generating bar and scatter plots
- Calculating the Area Under the Curve (AUC)
Working with .xls and .csv files
- Importing and exporting data between MS Excel / OpenOffice Calc
- Writing .xls and .csv files
Developing an automated data processing pipeline using Python
Requirements
Foundational biological knowledge regarding protein, RNA, and DNA sequences.
28 Hours
Testimonials (1)
The accesibilit of the trainer and the ability to communicate very effective,